Welcome to DuIvyTools Documentation (English)

DuIvyTools (DIT) is a simple analysis and visualization tool for GROMACS molecular dynamics simulation result files.

• DuIvyTools v0.6.0
  • What’s New in v0.6.0
  • Installation
  • Help Information
  • Command Line Parameters
    • Parameter Details
  • Command Details
    • xvg_show
    • xvg_compare
    • xvg_ave
    • xvg_show_distribution
    • xvg_show_stack
    • xvg_show_scatter
    • xvg_energy_compute
    • xvg_box_compare
    • xvg_combine
    • xvg_ave_bar
    • xvg_rama
    • xpm_show
    • xpm2csv
    • xpm2dat
    • xpm_diff
    • xpm_merge
    • mdp_gen
    • show_style
    • find_center
    • dccm_ascii
    • dssp
    • ndx_add
    • ndx_split
  • Plotting Styles
    • matplotlib
    • plotly
    • gnuplot
    • plotext
  • Program Modules
  • Cite DuIvyTools
  • Reward
• DuIvyTools v0.4.8 (Legacy)
  • Installation
  • HELP
  • XVG
    • xvg_show
    • xvg_compare
    • xvg_ave
    • xvg_mvave
    • xvg2csv
    • xvg_rama
    • xvg_show_distribution
    • xvg_show_stack
    • xvg_show_scatter
    • xvg_energy_compute
    • xvg_combine
    • xvg_ave_bar
    • xvg_box
  • XPM
    • xpm_show
    • xpm2csv
    • xpm2gpl
    • xpm2dat
  • NDX
    • ndx_show
    • ndx_rm_dup
    • ndx_rm
    • ndx_preserve
    • ndx_add
    • ndx_combine
    • ndx_rename
  • MDP
    • mdp_gen
  • Other Modules
    • show_style
    • find_center
    • pipi_dist_ang
    • hbond
    • dssp
    • mol_map
    • dccm_ascii
    • show_style
  • Future Features
  • Cite DuIvyTools

Indices and tables

• Index

• Search Page